socfpga: Adding Clock Manager driver

Clock Manager driver will be called to reconfigure all the
clocks setting based on user input. The input are passed to
Preloader through handoff files

Signed-off-by: Chin Liang See <clsee@altera.com>
Cc: Albert Aribaud <albert.u.boot@aribaud.net>
Cc: Tom Rini <trini@ti.com>
Cc: Wolfgang Denk <wd@denx.de>
CC: Pavel Machek <pavel@denx.de>
Cc: Dinh Nguyen <dinguyen@altera.com>
Acked-by: Pavel Machek <pavel@denx.de>

3 files changed, 451 insertions, 1 deletions

diff --git a/arch/arm/cpu/armv7/socfpga/Makefile b/arch/arm/cpu/armv7/socfpga/Makefile
index 3e84a0c..cbe1d40 100644
--- a/arch/arm/cpu/armv7/socfpga/Makefile
+++ b/arch/arm/cpu/armv7/socfpga/Makefile
@@ -8,5 +8,5 @@
 #
 
 obj-y	:= lowlevel_init.o
-obj-y	+= misc.o timer.o reset_manager.o system_manager.o
+obj-y	+= misc.o timer.o reset_manager.o system_manager.o clock_manager.o
 obj-$(CONFIG_SPL_BUILD) += spl.o freeze_controller.o
diff --git a/arch/arm/cpu/armv7/socfpga/clock_manager.c b/arch/arm/cpu/armv7/socfpga/clock_manager.c
new file mode 100644
index 0000000..23d697d
--- /dev/null
+++ b/arch/arm/cpu/armv7/socfpga/clock_manager.c
@@ -0,0 +1,361 @@
+/*
+ *  Copyright (C) 2013 Altera Corporation <www.altera.com>
+ *
+ * SPDX-License-Identifier:	GPL-2.0+
+ */
+
+#include <common.h>
+#include <asm/io.h>
+#include <asm/arch/clock_manager.h>
+
+static const struct socfpga_clock_manager *clock_manager_base =
+		(void *)SOCFPGA_CLKMGR_ADDRESS;
+
+#define CLKMGR_BYPASS_ENABLE	1
+#define CLKMGR_BYPASS_DISABLE	0
+#define CLKMGR_STAT_IDLE	0
+#define CLKMGR_STAT_BUSY	1
+#define CLKMGR_BYPASS_PERPLLSRC_SELECT_EOSC1		0
+#define CLKMGR_BYPASS_PERPLLSRC_SELECT_INPUT_MUX	1
+#define CLKMGR_BYPASS_SDRPLLSRC_SELECT_EOSC1		0
+#define CLKMGR_BYPASS_SDRPLLSRC_SELECT_INPUT_MUX	1
+
+#define CLEAR_BGP_EN_PWRDN \
+	(CLKMGR_MAINPLLGRP_VCO_PWRDN_SET(0)| \
+	CLKMGR_MAINPLLGRP_VCO_EN_SET(0)| \
+	CLKMGR_MAINPLLGRP_VCO_BGPWRDN_SET(0))
+
+#define VCO_EN_BASE \
+	(CLKMGR_MAINPLLGRP_VCO_PWRDN_SET(0)| \
+	CLKMGR_MAINPLLGRP_VCO_EN_SET(1)| \
+	CLKMGR_MAINPLLGRP_VCO_BGPWRDN_SET(0))
+
+static inline void cm_wait_for_lock(uint32_t mask)
+{
+	register uint32_t inter_val;
+	do {
+		inter_val = readl(&clock_manager_base->inter) & mask;
+	} while (inter_val != mask);
+}
+
+/* function to poll in the fsm busy bit */
+static inline void cm_wait_for_fsm(void)
+{
+	while (readl(&clock_manager_base->stat) & CLKMGR_STAT_BUSY)
+		;
+}
+
+/*
+ * function to write the bypass register which requires a poll of the
+ * busy bit
+ */
+static inline void cm_write_bypass(uint32_t val)
+{
+	writel(val, &clock_manager_base->bypass);
+	cm_wait_for_fsm();
+}
+
+/* function to write the ctrl register which requires a poll of the busy bit */
+static inline void cm_write_ctrl(uint32_t val)
+{
+	writel(val, &clock_manager_base->ctrl);
+	cm_wait_for_fsm();
+}
+
+/* function to write a clock register that has phase information */
+static inline void cm_write_with_phase(uint32_t value,
+	uint32_t reg_address, uint32_t mask)
+{
+	/* poll until phase is zero */
+	while (readl(reg_address) & mask)
+		;
+
+	writel(value, reg_address);
+
+	while (readl(reg_address) & mask)
+		;
+}
+
+/*
+ * Setup clocks while making no assumptions about previous state of the clocks.
+ *
+ * Start by being paranoid and gate all sw managed clocks
+ * Put all plls in bypass
+ * Put all plls VCO registers back to reset value (bandgap power down).
+ * Put peripheral and main pll src to reset value to avoid glitch.
+ * Delay 5 us.
+ * Deassert bandgap power down and set numerator and denominator
+ * Start 7 us timer.
+ * set internal dividers
+ * Wait for 7 us timer.
+ * Enable plls
+ * Set external dividers while plls are locking
+ * Wait for pll lock
+ * Assert/deassert outreset all.
+ * Take all pll's out of bypass
+ * Clear safe mode
+ * set source main and peripheral clocks
+ * Ungate clocks
+ */
+
+void cm_basic_init(const cm_config_t *cfg)
+{
+	uint32_t start, timeout;
+
+	/* Start by being paranoid and gate all sw managed clocks */
+
+	/*
+	 * We need to disable nandclk
+	 * and then do another apb access before disabling
+	 * gatting off the rest of the periperal clocks.
+	 */
+	writel(~CLKMGR_PERPLLGRP_EN_NANDCLK_MASK &
+		readl(&clock_manager_base->per_pll_en),
+		&clock_manager_base->per_pll_en);
+
+	/* DO NOT GATE OFF DEBUG CLOCKS & BRIDGE CLOCKS */
+	writel(CLKMGR_MAINPLLGRP_EN_DBGTIMERCLK_MASK |
+		CLKMGR_MAINPLLGRP_EN_DBGTRACECLK_MASK |
+		CLKMGR_MAINPLLGRP_EN_DBGCLK_MASK |
+		CLKMGR_MAINPLLGRP_EN_DBGATCLK_MASK |
+		CLKMGR_MAINPLLGRP_EN_S2FUSER0CLK_MASK |
+		CLKMGR_MAINPLLGRP_EN_L4MPCLK_MASK,
+		&clock_manager_base->main_pll_en);
+
+	writel(0, &clock_manager_base->sdr_pll_en);
+
+	/* now we can gate off the rest of the peripheral clocks */
+	writel(0, &clock_manager_base->per_pll_en);
+
+	/* Put all plls in bypass */
+	cm_write_bypass(
+		CLKMGR_BYPASS_PERPLLSRC_SET(
+		CLKMGR_BYPASS_PERPLLSRC_SELECT_EOSC1) |
+		CLKMGR_BYPASS_SDRPLLSRC_SET(
+		CLKMGR_BYPASS_SDRPLLSRC_SELECT_EOSC1) |
+		CLKMGR_BYPASS_PERPLL_SET(CLKMGR_BYPASS_ENABLE) |
+		CLKMGR_BYPASS_SDRPLL_SET(CLKMGR_BYPASS_ENABLE) |
+		CLKMGR_BYPASS_MAINPLL_SET(CLKMGR_BYPASS_ENABLE));
+
+	/*
+	 * Put all plls VCO registers back to reset value.
+	 * Some code might have messed with them.
+	 */
+	writel(CLKMGR_MAINPLLGRP_VCO_RESET_VALUE,
+	       &clock_manager_base->main_pll_vco);
+	writel(CLKMGR_PERPLLGRP_VCO_RESET_VALUE,
+	       &clock_manager_base->per_pll_vco);
+	writel(CLKMGR_SDRPLLGRP_VCO_RESET_VALUE,
+	       &clock_manager_base->sdr_pll_vco);
+
+	/*
+	 * The clocks to the flash devices and the L4_MAIN clocks can
+	 * glitch when coming out of safe mode if their source values
+	 * are different from their reset value.  So the trick it to
+	 * put them back to their reset state, and change input
+	 * after exiting safe mode but before ungating the clocks.
+	 */
+	writel(CLKMGR_PERPLLGRP_SRC_RESET_VALUE,
+	       &clock_manager_base->per_pll_src);
+	writel(CLKMGR_MAINPLLGRP_L4SRC_RESET_VALUE,
+	       &clock_manager_base->main_pll_l4src);
+
+	/* read back for the required 5 us delay. */
+	readl(&clock_manager_base->main_pll_vco);
+	readl(&clock_manager_base->per_pll_vco);
+	readl(&clock_manager_base->sdr_pll_vco);
+
+
+	/*
+	 * We made sure bgpwr down was assert for 5 us. Now deassert BG PWR DN
+	 * with numerator and denominator.
+	 */
+	writel(cfg->main_vco_base | CLEAR_BGP_EN_PWRDN |
+		CLKMGR_MAINPLLGRP_VCO_REGEXTSEL_MASK,
+		&clock_manager_base->main_pll_vco);
+
+	writel(cfg->peri_vco_base | CLEAR_BGP_EN_PWRDN |
+		CLKMGR_PERPLLGRP_VCO_REGEXTSEL_MASK,
+		&clock_manager_base->per_pll_vco);
+
+	writel(CLKMGR_SDRPLLGRP_VCO_OUTRESET_SET(0) |
+		CLKMGR_SDRPLLGRP_VCO_OUTRESETALL_SET(0) |
+		cfg->sdram_vco_base | CLEAR_BGP_EN_PWRDN |
+		CLKMGR_SDRPLLGRP_VCO_REGEXTSEL_MASK,
+		&clock_manager_base->sdr_pll_vco);
+
+	/*
+	 * Time starts here
+	 * must wait 7 us from BGPWRDN_SET(0) to VCO_ENABLE_SET(1)
+	 */
+	reset_timer();
+	start = get_timer(0);
+	/* timeout in unit of us as CONFIG_SYS_HZ = 1000*1000 */
+	timeout = 7;
+
+	/* main mpu */
+	writel(cfg->mpuclk, &clock_manager_base->main_pll_mpuclk);
+
+	/* main main clock */
+	writel(cfg->mainclk, &clock_manager_base->main_pll_mainclk);
+
+	/* main for dbg */
+	writel(cfg->dbgatclk, &clock_manager_base->main_pll_dbgatclk);
+
+	/* main for cfgs2fuser0clk */
+	writel(cfg->cfg2fuser0clk,
+	       &clock_manager_base->main_pll_cfgs2fuser0clk);
+
+	/* Peri emac0 50 MHz default to RMII */
+	writel(cfg->emac0clk, &clock_manager_base->per_pll_emac0clk);
+
+	/* Peri emac1 50 MHz default to RMII */
+	writel(cfg->emac1clk, &clock_manager_base->per_pll_emac1clk);
+
+	/* Peri QSPI */
+	writel(cfg->mainqspiclk, &clock_manager_base->main_pll_mainqspiclk);
+
+	writel(cfg->perqspiclk, &clock_manager_base->per_pll_perqspiclk);
+
+	/* Peri pernandsdmmcclk */
+	writel(cfg->pernandsdmmcclk,
+	       &clock_manager_base->per_pll_pernandsdmmcclk);
+
+	/* Peri perbaseclk */
+	writel(cfg->perbaseclk, &clock_manager_base->per_pll_perbaseclk);
+
+	/* Peri s2fuser1clk */
+	writel(cfg->s2fuser1clk, &clock_manager_base->per_pll_s2fuser1clk);
+
+	/* 7 us must have elapsed before we can enable the VCO */
+	while (get_timer(start) < timeout)
+		;
+
+	/* Enable vco */
+	/* main pll vco */
+	writel(cfg->main_vco_base | VCO_EN_BASE,
+	       &clock_manager_base->main_pll_vco);
+
+	/* periferal pll */
+	writel(cfg->peri_vco_base | VCO_EN_BASE,
+	       &clock_manager_base->per_pll_vco);
+
+	/* sdram pll vco */
+	writel(CLKMGR_SDRPLLGRP_VCO_OUTRESET_SET(0) |
+		CLKMGR_SDRPLLGRP_VCO_OUTRESETALL_SET(0) |
+		cfg->sdram_vco_base | VCO_EN_BASE,
+		&clock_manager_base->sdr_pll_vco);
+
+	/* L3 MP and L3 SP */
+	writel(cfg->maindiv, &clock_manager_base->main_pll_maindiv);
+
+	writel(cfg->dbgdiv, &clock_manager_base->main_pll_dbgdiv);
+
+	writel(cfg->tracediv, &clock_manager_base->main_pll_tracediv);
+
+	/* L4 MP, L4 SP, can0, and can1 */
+	writel(cfg->perdiv, &clock_manager_base->per_pll_div);
+
+	writel(cfg->gpiodiv, &clock_manager_base->per_pll_gpiodiv);
+
+#define LOCKED_MASK \
+	(CLKMGR_INTER_SDRPLLLOCKED_MASK  | \
+	CLKMGR_INTER_PERPLLLOCKED_MASK  | \
+	CLKMGR_INTER_MAINPLLLOCKED_MASK)
+
+	cm_wait_for_lock(LOCKED_MASK);
+
+	/* write the sdram clock counters before toggling outreset all */
+	writel(cfg->ddrdqsclk & CLKMGR_SDRPLLGRP_DDRDQSCLK_CNT_MASK,
+	       &clock_manager_base->sdr_pll_ddrdqsclk);
+
+	writel(cfg->ddr2xdqsclk & CLKMGR_SDRPLLGRP_DDR2XDQSCLK_CNT_MASK,
+	       &clock_manager_base->sdr_pll_ddr2xdqsclk);
+
+	writel(cfg->ddrdqclk & CLKMGR_SDRPLLGRP_DDRDQCLK_CNT_MASK,
+	       &clock_manager_base->sdr_pll_ddrdqclk);
+
+	writel(cfg->s2fuser2clk & CLKMGR_SDRPLLGRP_S2FUSER2CLK_CNT_MASK,
+	       &clock_manager_base->sdr_pll_s2fuser2clk);
+
+	/*
+	 * after locking, but before taking out of bypass
+	 * assert/deassert outresetall
+	 */
+	uint32_t mainvco = readl(&clock_manager_base->main_pll_vco);
+
+	/* assert main outresetall */
+	writel(mainvco | CLKMGR_MAINPLLGRP_VCO_OUTRESETALL_MASK,
+	       &clock_manager_base->main_pll_vco);
+
+	uint32_t periphvco = readl(&clock_manager_base->per_pll_vco);
+
+	/* assert pheriph outresetall */
+	writel(periphvco | CLKMGR_PERPLLGRP_VCO_OUTRESETALL_MASK,
+	       &clock_manager_base->per_pll_vco);
+
+	/* assert sdram outresetall */
+	writel(cfg->sdram_vco_base | VCO_EN_BASE|
+		CLKMGR_SDRPLLGRP_VCO_OUTRESETALL_SET(1),
+		&clock_manager_base->sdr_pll_vco);
+
+	/* deassert main outresetall */
+	writel(mainvco & ~CLKMGR_MAINPLLGRP_VCO_OUTRESETALL_MASK,
+	       &clock_manager_base->main_pll_vco);
+
+	/* deassert pheriph outresetall */
+	writel(periphvco & ~CLKMGR_PERPLLGRP_VCO_OUTRESETALL_MASK,
+	       &clock_manager_base->per_pll_vco);
+
+	/* deassert sdram outresetall */
+	writel(CLKMGR_SDRPLLGRP_VCO_OUTRESETALL_SET(0) |
+		cfg->sdram_vco_base | VCO_EN_BASE,
+		&clock_manager_base->sdr_pll_vco);
+
+	/*
+	 * now that we've toggled outreset all, all the clocks
+	 * are aligned nicely; so we can change any phase.
+	 */
+	cm_write_with_phase(cfg->ddrdqsclk,
+			    (uint32_t)&clock_manager_base->sdr_pll_ddrdqsclk,
+			    CLKMGR_SDRPLLGRP_DDRDQSCLK_PHASE_MASK);
+
+	/* SDRAM DDR2XDQSCLK */
+	cm_write_with_phase(cfg->ddr2xdqsclk,
+			    (uint32_t)&clock_manager_base->sdr_pll_ddr2xdqsclk,
+			    CLKMGR_SDRPLLGRP_DDR2XDQSCLK_PHASE_MASK);
+
+	cm_write_with_phase(cfg->ddrdqclk,
+			    (uint32_t)&clock_manager_base->sdr_pll_ddrdqclk,
+			    CLKMGR_SDRPLLGRP_DDRDQCLK_PHASE_MASK);
+
+	cm_write_with_phase(cfg->s2fuser2clk,
+			    (uint32_t)&clock_manager_base->sdr_pll_s2fuser2clk,
+			    CLKMGR_SDRPLLGRP_S2FUSER2CLK_PHASE_MASK);
+
+	/* Take all three PLLs out of bypass when safe mode is cleared. */
+	cm_write_bypass(
+		CLKMGR_BYPASS_PERPLLSRC_SET(
+			CLKMGR_BYPASS_PERPLLSRC_SELECT_EOSC1) |
+		CLKMGR_BYPASS_SDRPLLSRC_SET(
+			CLKMGR_BYPASS_SDRPLLSRC_SELECT_EOSC1) |
+		CLKMGR_BYPASS_PERPLL_SET(CLKMGR_BYPASS_DISABLE) |
+		CLKMGR_BYPASS_SDRPLL_SET(CLKMGR_BYPASS_DISABLE) |
+		CLKMGR_BYPASS_MAINPLL_SET(CLKMGR_BYPASS_DISABLE));
+
+	/* clear safe mode */
+	cm_write_ctrl(readl(&clock_manager_base->ctrl) |
+			CLKMGR_CTRL_SAFEMODE_SET(CLKMGR_CTRL_SAFEMODE_MASK));
+
+	/*
+	 * now that safe mode is clear with clocks gated
+	 * it safe to change the source mux for the flashes the the L4_MAIN
+	 */
+	writel(cfg->persrc, &clock_manager_base->per_pll_src);
+	writel(cfg->l4src, &clock_manager_base->main_pll_l4src);
+
+	/* Now ungate non-hw-managed clocks */
+	writel(~0, &clock_manager_base->main_pll_en);
+	writel(~0, &clock_manager_base->per_pll_en);
+	writel(~0, &clock_manager_base->sdr_pll_en);
+}
diff --git a/arch/arm/cpu/armv7/socfpga/spl.c b/arch/arm/cpu/armv7/socfpga/spl.c
index 36a00c3..2ae88bb 100644
--- a/arch/arm/cpu/armv7/socfpga/spl.c
+++ b/arch/arm/cpu/armv7/socfpga/spl.c
@@ -28,10 +28,99 @@ u32 spl_boot_device(void)
 void spl_board_init(void)
 {
 #ifndef CONFIG_SOCFPGA_VIRTUAL_TARGET
+	cm_config_t cm_default_cfg = {
+		/* main group */
+		MAIN_VCO_BASE,
+		CLKMGR_MAINPLLGRP_MPUCLK_CNT_SET(
+			CONFIG_HPS_MAINPLLGRP_MPUCLK_CNT),
+		CLKMGR_MAINPLLGRP_MAINCLK_CNT_SET(
+			CONFIG_HPS_MAINPLLGRP_MAINCLK_CNT),
+		CLKMGR_MAINPLLGRP_DBGATCLK_CNT_SET(
+			CONFIG_HPS_MAINPLLGRP_DBGATCLK_CNT),
+		CLKMGR_MAINPLLGRP_MAINQSPICLK_CNT_SET(
+			CONFIG_HPS_MAINPLLGRP_MAINQSPICLK_CNT),
+		CLKMGR_PERPLLGRP_PERNANDSDMMCCLK_CNT_SET(
+			CONFIG_HPS_MAINPLLGRP_MAINNANDSDMMCCLK_CNT),
+		CLKMGR_MAINPLLGRP_CFGS2FUSER0CLK_CNT_SET(
+			CONFIG_HPS_MAINPLLGRP_CFGS2FUSER0CLK_CNT),
+		CLKMGR_MAINPLLGRP_MAINDIV_L3MPCLK_SET(
+			CONFIG_HPS_MAINPLLGRP_MAINDIV_L3MPCLK) |
+		CLKMGR_MAINPLLGRP_MAINDIV_L3SPCLK_SET(
+			CONFIG_HPS_MAINPLLGRP_MAINDIV_L3SPCLK) |
+		CLKMGR_MAINPLLGRP_MAINDIV_L4MPCLK_SET(
+			CONFIG_HPS_MAINPLLGRP_MAINDIV_L4MPCLK) |
+		CLKMGR_MAINPLLGRP_MAINDIV_L4SPCLK_SET(
+			CONFIG_HPS_MAINPLLGRP_MAINDIV_L4SPCLK),
+		CLKMGR_MAINPLLGRP_DBGDIV_DBGATCLK_SET(
+			CONFIG_HPS_MAINPLLGRP_DBGDIV_DBGATCLK) |
+		CLKMGR_MAINPLLGRP_DBGDIV_DBGCLK_SET(
+			CONFIG_HPS_MAINPLLGRP_DBGDIV_DBGCLK),
+		CLKMGR_MAINPLLGRP_TRACEDIV_TRACECLK_SET(
+			CONFIG_HPS_MAINPLLGRP_TRACEDIV_TRACECLK),
+		CLKMGR_MAINPLLGRP_L4SRC_L4MP_SET(
+			CONFIG_HPS_MAINPLLGRP_L4SRC_L4MP) |
+		CLKMGR_MAINPLLGRP_L4SRC_L4SP_SET(
+			CONFIG_HPS_MAINPLLGRP_L4SRC_L4SP),
+
+		/* peripheral group */
+		PERI_VCO_BASE,
+		CLKMGR_PERPLLGRP_EMAC0CLK_CNT_SET(
+			CONFIG_HPS_PERPLLGRP_EMAC0CLK_CNT),
+		CLKMGR_PERPLLGRP_EMAC1CLK_CNT_SET(
+			CONFIG_HPS_PERPLLGRP_EMAC1CLK_CNT),
+		CLKMGR_PERPLLGRP_PERQSPICLK_CNT_SET(
+			CONFIG_HPS_PERPLLGRP_PERQSPICLK_CNT),
+		CLKMGR_PERPLLGRP_PERNANDSDMMCCLK_CNT_SET(
+			CONFIG_HPS_PERPLLGRP_PERNANDSDMMCCLK_CNT),
+		CLKMGR_PERPLLGRP_PERBASECLK_CNT_SET(
+			CONFIG_HPS_PERPLLGRP_PERBASECLK_CNT),
+		CLKMGR_PERPLLGRP_S2FUSER1CLK_CNT_SET(
+			CONFIG_HPS_PERPLLGRP_S2FUSER1CLK_CNT),
+		CLKMGR_PERPLLGRP_DIV_USBCLK_SET(
+			CONFIG_HPS_PERPLLGRP_DIV_USBCLK) |
+		CLKMGR_PERPLLGRP_DIV_SPIMCLK_SET(
+			CONFIG_HPS_PERPLLGRP_DIV_SPIMCLK) |
+		CLKMGR_PERPLLGRP_DIV_CAN0CLK_SET(
+			CONFIG_HPS_PERPLLGRP_DIV_CAN0CLK) |
+		CLKMGR_PERPLLGRP_DIV_CAN1CLK_SET(
+			CONFIG_HPS_PERPLLGRP_DIV_CAN1CLK),
+		CLKMGR_PERPLLGRP_GPIODIV_GPIODBCLK_SET(
+			CONFIG_HPS_PERPLLGRP_GPIODIV_GPIODBCLK),
+		CLKMGR_PERPLLGRP_SRC_QSPI_SET(
+			CONFIG_HPS_PERPLLGRP_SRC_QSPI) |
+		CLKMGR_PERPLLGRP_SRC_NAND_SET(
+			CONFIG_HPS_PERPLLGRP_SRC_NAND) |
+		CLKMGR_PERPLLGRP_SRC_SDMMC_SET(
+			CONFIG_HPS_PERPLLGRP_SRC_SDMMC),
+
+		/* sdram pll group */
+		SDR_VCO_BASE,
+		CLKMGR_SDRPLLGRP_DDRDQSCLK_PHASE_SET(
+			CONFIG_HPS_SDRPLLGRP_DDRDQSCLK_PHASE) |
+		CLKMGR_SDRPLLGRP_DDRDQSCLK_CNT_SET(
+			CONFIG_HPS_SDRPLLGRP_DDRDQSCLK_CNT),
+		CLKMGR_SDRPLLGRP_DDR2XDQSCLK_PHASE_SET(
+			CONFIG_HPS_SDRPLLGRP_DDR2XDQSCLK_PHASE) |
+		CLKMGR_SDRPLLGRP_DDR2XDQSCLK_CNT_SET(
+			CONFIG_HPS_SDRPLLGRP_DDR2XDQSCLK_CNT),
+		CLKMGR_SDRPLLGRP_DDRDQCLK_PHASE_SET(
+			CONFIG_HPS_SDRPLLGRP_DDRDQCLK_PHASE) |
+		CLKMGR_SDRPLLGRP_DDRDQCLK_CNT_SET(
+			CONFIG_HPS_SDRPLLGRP_DDRDQCLK_CNT),
+		CLKMGR_SDRPLLGRP_S2FUSER2CLK_PHASE_SET(
+			CONFIG_HPS_SDRPLLGRP_S2FUSER2CLK_PHASE) |
+		CLKMGR_SDRPLLGRP_S2FUSER2CLK_CNT_SET(
+			CONFIG_HPS_SDRPLLGRP_S2FUSER2CLK_CNT),
+	};
+
 	debug("Freezing all I/O banks\n");
 	/* freeze all IO banks */
 	sys_mgr_frzctrl_freeze_req();
 
+	debug("Reconfigure Clock Manager\n");
+	/* reconfigure the PLLs */
+	cm_basic_init(&cm_default_cfg);
+
 	/* configure the pin muxing through system manager */
 	sysmgr_pinmux_init();
 #endif /* CONFIG_SOCFPGA_VIRTUAL_TARGET */